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8Journal of Siberian Federal University. Biology 2018 11(4): 333-339
УДК 579.811.25.082.26
Growth of Purple Sulfur Bacterium Thiocapsa sp. Shira_1 at Low Temperatures Characteristic of the Chemocline of Lake Shira
Denis Y. Rogozin*a,b, Vladimir V. Zykova and Maxim O. Tarnovskya
aInstitute of Biophysics SB RAS FRC "Krasnoyarsk Science Center SB RAS" 50/50 Akademgorodok, Krasnoyarsk, 660036, Russia
bSiberian Federal University 79 Svobodny, Krasnoyarsk, 660041, Russia
Received 22.09.2018, received in revised form 20.11.2018, accepted 10.12.2018 Forecasting the abundance of phototrophic sulfur bacteria in lakes is very important because 1) these bacteria are major consumers of hydrogen sulfide, and 2) fossil carotenoids of these bacteria are retrospective biomarkers of limnological conditions. Therefore, understanding the factors controlling the dynamics of the abundance of phototrophic sulfur bacteria in a lake is necessary both for the prediction of hydrogen sulfide content and for paleo-limnological reconstruction. Based on long-term monitoring of the abundance of purple sulfur bacteria (PSB) in the saline meromictic Lake Shira (South Siberia, Khakassia), we proposed a hypothesis that relatively small changes in water temperature in the cold deep chemocline affect the PSB abundance in the lake. We tested this hypothesis experimentally. The purple sulfur bacterium Thiocapsa sp. Shiral (Chromatiaceae) from Lake Shira (South Siberia, Russia) was grown on a sulfide-containing synthetic medium under anoxic conditions in batch culture at low temperatures, from -1°C to +8°C, which were similar to in situ temperatures observed in the chemocline of Lake Shira. The cell growth rate at +8°C was similar to the growth rate at room temperature, whereas there was no growth at -1°C and +5°C. Therefore, the variations in the biomass of purple sulfur bacteria (PSB) observed in Lake Shira could be caused by variations in chemocline temperature. The high correlation between chemocline temperature and PSB biomass supported this conclusion.
Keywords: purple sulfur bacteria, chemocline, temperature, batch culture.
Citation: Rogozin D.Y., Zykov V.V., Tarnovsky M.O. Growth of purple sulfur bacterium Thiocapsa sp. Shira_1 at low temperatures characteristic of the chemocline of Lake Shira. J. Sib. Fed. Univ. Biol., 2018, 11(4), 333-339. DOI: 10.17516/19971389-0076.
© Siberian Federal University. All rights reserved
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC 4.0). Corresponding author E-mail address: [email protected]
*
Рост пурпурных серных бактерий Thiocapsa sp. Shira_1 при низких температурах, характерных для хемоклина озера Шира
Д.Ю. Рогозин3,5, В.В. Зыкова, М.О. Тарновскийа
аИнститут биофизики СО РАН ФИЦ «Красноярский научный центр СО РАН» Россия, 660036, Красноярск, Академгородок, 50/50 бСибирский федеральный университет Россия, 660041, Красноярск, пр. Свободный, 79
Прогноз динамики численности фототрофных серных бактерий в природных стратифицированных водоемах признан важной задачей. Во-первых, данная группа бактерий -основной потребитель сероводорода, который является токсическим и бальнеологическим компонентом. Во-вторых, каротиноиды фототрофных серных бактерий, захороненные в донных отложениях, используются в качестве биомаркеров прошлых состояний озера. Таким образом, знание факторов, контролирующих активность фототрофных серных бактерий, необходимо как для прогноза концентрации сероводорода, так и для палеоклиматических реконструкций. На основе многолетних наблюдений за динамикой численности пурпурных серных бактерий (ПСБ) в соленом меромиктическом озере Шира (юг Сибири, Хакасия) нами была выдвинута гипотеза о том, что небольшие вариации температуры воды в холодном и глубоком хемоклине озера влияют на численность ПСБ. Для проверки этой гипотезы нами исследован рост штамма пурпурных серных бактерий Шосар&а Shira1 измеромиктического соленого озера Шира в периодической культуре при температурах от минус 1 до 8 °С, характерных для зоны хемоклина данного озера. Бактерий выращивали при постоянном освещении в анаэробных условиях на синтетической среде с добавлением сероводорода. Показано, что рост данного штамма при 8 °С не отличался от такового при комнатной температуре, тогда как при температурах минус 1 и 5 °С достоверный рост отсутствовал. Результаты эксперимента свидетельствуют, что повышение температуры в зоне хемоклина озера до 8 °С является фактором, способствующим увеличению численности популяции этих бактерий в озере, что согласуется с многолетними наблюдениями.
Ключевые слова: пурпурные серные бактерии, хемоклин, температура, периодическая культура, культивирование.
Introduction
Purple sulfur bacteria (PSB), as well as green sulfur bacteria (GSB), are phototrophic microorganisms that perform anoxygenic photosynthesis using hydrogen sulfide and other
reduced sulfur compounds as electron donors. Therefore, the ecological niche of these bacteria is associated with the presence of both sunlight and hydrogen sulfide. In the present-day biosphere, such conditions can be found in water or on the
surface of bottom sediments of stratified water bodies: the sunlight penetrates to this depth, but oxygen is absent, while hydrogen sulfide, a product of bacterial sulfate reduction, is present. These conditions characterize the chemocline of meromictic lakes, at the upper boundary of the hydrogen sulfide zone (oxic-anoxic interface) (Gorlenko et al., 1977; Pfennig, Truper, 1989).
It is extremely important to predict hydrogen sulfide concentration in such water bodies, as that hydrogen sulfide acts as a balneal component (Malakhov et al., 1963). To predict hydrogen sulfide concentration, one should be able to predict the activity of PSB, which are the main consumers of this compound. In Lake Shira, which experiences harsh continental climate and which is situated in southern Siberia (the North-Minusinsk Depression, the Republic of Khakassia), the chemocline zone is located at depths between 11 and 16 m, where the water temperature remains low, 2-4°C on average, throughout the year. In some years, however, the temperature varies more widely, between -0.5°C and +8°C, and PSB biomass changes as well (Rogozin et al., 2016). Thus, based on the correlation between PSB and temperature, we put forward the hypothesis that PSB in Lake Shira are sensitive to temperature variations within the range mentioned above. Because in nature, PSB activity may be influenced simultaneously by a number of important factors (light, pH, salinity, etc.), we tested this hypothesis under controlled laboratory conditions.
The purpose of this study was to experimentally investigate PSB growth dynamics at low temperatures corresponding to the temperature range in Lake Shira and to determine whether bacterial cells responded to a rise in temperature of a few degrees Celsius near zero, e.g., to +8°C, with a statistically significant numerical increase. The experiment was performed with the PSB strain that dominated in
Lake Shira over the monitoring period, between 2002 and 2017 (Lunina et al., 2007; Rogozin et al., 2010; Rogozin, unpublished).
Materials and Methods
The experiment was performed with the strain of purple bacterium Thiocapsa sp. Shira_1 (Chromatiaceae), which we had previously isolated from the anaerobic zone of Lake Shira (AJ633676 in EMBL/GenBank) (Rogozin et al., 2010).
Bacterial cells were grown on a synthetic liquid medium imitating the ionic composition of Lake Shira, g L-1: MgS04 - 11.67; NaCl -2.24; Na2S04 - 7.43; MgCl2 - 0.22; CaCl2 - 0.2; KH2P04 - 0.16; NH4Cl - 0.76; Na2S - 0.099; NaHCO3 - 0.67; vitamin B12 - 0.02; Sl12 - 1 ml L-1 (Pfennig, Truper, 1989).
Bacterial cells were cultured in 150-ml sealed glass syringes (Janet's syringes); the culture had been grown in a flask and inoculated into the syringes during the exponential growth phase, at a temperature of +21°C (Fig. 1). The light source was a daylight fluorescent tube, and, thus, all syringes received equal amounts of light. Cultivation was conducted under continuous light, with light intensity on the surface of the syringes of 670 lx. The syringes were placed into a bath containing a 6% NaCl solution (to prevent freezing), and bath temperature remained constant through use of a KRIO-VT universal continuous-flow cryostat (Termex, Russia). The temperature in the bath did not vary by more than ±0.4°C during the experiment. A separate experiment with bacterial culture was conducted at each temperature (-1, +5, +8°C). At a temperature of -1°C, the experiment was run in triplicate (three syringes), and at temperatures of +5 and +8°C, the experiments were run in duplicate. In each experiment, to control viability of the cells, one additional (control) syringe was placed into a bath that contained the same salt solution but at
Fig. 1. A schematic diagram of the apparatus for cultivation of purple sulfur bacteria at low temperature. 1, 2, 3 - syringes submersed into the temperature stabilized 6% NaCl solution. K is the reference syringe submersed into the 6% NaCl solution at +21°C
a temperature of 21±1°C, which is known to be favourable for this strain. Hydrogen sulfide was added as 5 ml of the 3.5% Ny2S-9H2O solution at the beginning of each expe rime nt, simultaneously with the inoculation. Thus, i n each experiment, both the treatment and contro 1 syringes were kept under the same conditions, with the exception of temperature. The experiment at the temperature of -1°C was terminated earlier than the other experiments (at Day 6) due to failure of the thermostat.
To determine PSB cellnumbers, samples of suspension were periodically removed from the syringes by pushing the plunger in. The number of cells was determined by converting suspension optical density to cell number. Optical density of suspension was measured using a UVIKON 943 spectrophotometer (Kontron, Italy), at a wavelength of 830 nm, which corresponds to the absorption maximum of bacteriochlorophyll a (Overmann et al., 1991). The conversion formula was obtained by linear regression of the data of microscopic counts. The cells were counted in four samples of suspension, which differed in their optical density (Fig. 2). To count cells, suspension was diluted by a factor of 30 with the synthetic medium supplemented with 0.6 ml formalin. Two millilitres of each
diluted suspension was passed through a black polycarbonate filter (pore size 0.2 ^m). Cell nuclei were visualized using a solution of 4',6-diamidino-2-phenylindole (DAPI), 15 ^m of which was poured onto the filter and kept in the dark room for 20 min. For each of the four samples of suspension with the measured optical density, cells were counted in 20 different fields of the filter at x100d magnification under a CarlZeiss FL40 fluorescence microscope. Cell numbers in the graphs are giv n as the means =1= standand deviation of the mean for P = 0.95. Statistical significance of bacterial growth was estimated using single-factor analysis of variance with F-test at 95% confidence level (Lakin, 1980). Statistical analysis was done using STATISTICA 10 software.
Results and Discussion
The relationship between the optical density of cell suspension and cell number was adequately described by the linear function (r2 = 0.85) (Fig. 2), justifying the use of the spectrophotometric method to estimate the number of PSB cells in this experiment.
Using linear regression, we obtained a formula for calculating the number of cells for probability P = 0.95:
X = (29.41 ± 1.45) OD830 - (1.57 ± 0.55)
where X is cell number (106 cells ml-1) and OD830 is optical density of the suspension.
In each experiment, a significant increase in cell numbers was observed in control syringes in the first 36 h (Fig. 3), suggesting that the composition of the medium was favourable for cell growth and that the inoculum was sufficiently physiologically active. At temperatures of -1°C and +5°C, no significant increase in cell numbers was noted, suggesting the unfavourable effect of the low temperatures in this range on cell growth (Fig. 3 A, B). However, cells grown at +8°C showed a significant numerical increase, which
was comparable to that observed in the control syringe (Fig. 3 C). Specific growth rate, estimated on the assumption of exponential growth, was approximately 0.04 h-1 at +8°C and +21°C in the first 12 h. In all syringes where cell numbers had been increasing, cell growth slowed down or stopped after 48 h, likely because of sulfide depletion (sulfide concentration in the syringes was not measured), the self-shading effect in the dense culture, and other possible bottle effects (changes in the composition of the medium, pH, etc.) that occur in batch culture.
Thus, the present study shows that the PSB strain tested in experiments is sensitive to the insignificant temperature variations in the
Fig. 3. Dynamics of PSB abundance in three experiments at different temperatures: A: -1°C; B: +5°C; C: +8°C; in each experiment, the reference sample was cultivated at +21°C
chemocline of Lake Shira, and its growth rate at +8°C is similar to that at room temperature. The experimental data reported in a study by Parker et al. (1983) suggested that specific growth rate of the PSB Lamprocystis roseopersicina, whose ecophysiological and phylogenetic characteristics are similar to those of our strain, increased by a factor of 1.3 as the temperature rose from 0°C to +5°C and decreased at +15°C. However, we have not found any experimental data for temperatures below 0°C, and a more exact optimal temperature for that strain is not known.
The similar growth rates of our strain at +8°C and at room temperature (Fig. 3 C) suggest that our strain has adapted to low temperatures characteristic of its habitat. However, at or below +5°C, no growth is noted, suggesting this strain is very sensitive to small temperature variations in the range characteristic of the chemocline of Lake Shira.
In a previous study, we showed that PSB numbers in Lake Shira correlated positively with the temperature in the chemocline; namely, PSB numbers were extremely low in 2010, at -0.5°C, and, by contrast, exceptionally high in 2007, at +8°C (Rogozin et al., 2016). A significant positive correlation between the temperature in the chemocline and PSB numbers was observed both in the season when the water was covered with ice and in the open water season. The highest temperature was recorded in summer 2007 (about +8°C) and the lowest in winters of 2003, 2010, and 2012 (-0.5°C); in 2003 and 2010, the temperature did not rise above 0°C even in summer (Rogozin et al., 2016).
Temperature variations were caused by year-to-year variations in mixing of water masses, which was confirmed by strong correlation
References
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Acknowledgements
The authors are grateful to the two anonymous reviewers for their valuable comments, which have led to significant improvements of the manuscript. This study was supported by RFBR (Project No. 16-05-00091) and Integrated Program for Basic Research of SB RAS II.1 (Project "Biophysical and lithological-geochemical responses of lake sedimentation systems on climate change in the late Holocene").
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