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Clathrin-Mediated Endocytosis and Adaptor Proteins
N.V. Popova*, I.E. Deyev, A.G. Petrenko
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Miklukho-Maklaya St., 16/10, Moscow, Russia, 117997 *E-mail: [email protected]
Copyright © 2013 Park-media, Ltd. This is an open access article distributed under the Creative Commons Attribution License,which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
ABSTRACT Macromolecules gain access to the cytoplasm of eukaryotic cells using one of several ways of which clathrin-dependent endocytosis is the most researched. Although the mechanism of clathrin-mediated endocytosis is well understood in general, novel adaptor proteins that play various roles in ensuring specific regulation of the mentioned process are being discovered all the time. This review provides a detailed account of the mechanism of clathrin-mediated internalization of activated G protein-coupled receptors, as well as a description of the major proteins involved in this process.
KEYWORDS adaptor proteins, clathrin, endocytosis.
ABBREVIATIONS EEA1 - Early Endosome Antigen 1; GPCR - G-Protein-Coupled Receptor; GRK - G-protein-coupled Receptor Kinase; LDLR - Low-Density Lipoprotein Receptor; PtdIns(4,5)P2 - phosphatidylinositol-4,5-bisphosphate.
INTRODUCTION
Endocytosis is a fundamental process that ensures delivery of extracellular or membrane-localized macromolecules to the cytoplasm. Endocytosis is necessary for nutrients to reach the cell, the regulation of the activity of transmembrane receptors, and synaptic vesicle recycling. Clathrin-mediated endocytosis represents the entry of fragments of the cytoplasmic membrane, along with all of their contents, into the cell in the form of vesicles coated on the outside with a lattice consisting of polymerized clathrin. In particular, the clathrin-me-diated mechanism is utilized to carry out the endocy-tosis of activated cell surface receptors. Binding of the receptor molecule to the ligand and activation of the former render possible the subsequent binding of the intracellular part of the receptor to the adaptor proteins. These proteins mediate the interaction between receptors and clathrin molecules, resulting in the formation of the clathrin coat. Several classes of adaptor proteins have been identified.
ENDOCYTOSIS OF G-PROTEIN-COUPLED RECEPTORS AS an example OF CLATHRIN-MEDIATED ENDOCYTOSIS
The superfamily of G-protein-coupled receptors (GPCR) is considered to be the largest family of membrane proteins involved in intracellular signal transduction [1]. The general structural feature of GPCR is the presence of seven a-helical transmembrane hydrophobic segments each consisting of 25-35 amino acid residues [2]. The N-terminal portion of GPCR and three
loops between the transmembrane segments are found outside the cell, and the C-terminal part and the other three loops are found on the cytoplasmic side of the plasma membrane.
The ligands of various GPCR include ions, organic odorants, amines, peptides, proteins, lipids, nucleotides, and photons. Activation of the receptors by their corresponding ligands leads to the formation of complexes consisting of receptors and heterotrimeric G-proteins (consisting of 3 subunits) and the associated exchange of GDP for GTP. This exchange causes the dissociation of a G-protein into a GTP-bound a-subunit and a complex consisting of P- and y-subunits, as well as the dissociation of all three subunits of the G-protein from the receptor. It is now proven that both the a-subunit and the Py complex serve as signal transducers by activating or inhibiting enzymes and ion channels [3]. Bound GTP is hydrolyzed following interaction with the effector and re-association of the a-subunit and Py to form a complex consisting of three subunits with a bound GDP. This complex is again able to interact with the activated receptor [4].
Binding of the ligand to the receptor leads to conformational changes that give rise to the G-protein-medi-ated signal transduction and conversion of the receptor into the protein kinase GRK substrate (G-protein-cou-pled Receptor Kinases). The serine or threonine residues of the ligand-activated receptor located in the cytoplasmic domain and/or in the third cytoplasmic loop are phosphorylated. Then, P-arrestins bind to the
Agonist
Receptor
desensitization
G protein
Recycling back to cytoplasmic membrane
Biological
effect
))
GRK ' ~ "'J Internalization , ^РРР
t
P-arr
Dephosphorylation
Endosome
V
rm (( \
Degradation v-
Lysosome
РРР
Fig 1. Schematic diagram of clathrin-mediated internalization of a receptor following its activation
activated and phosphorylated receptor [5]. P-Arrestins play a significant role in the process of internalization of GPCR as their binding leads to clathrin-mediated en-docytosis of the receptor attributed to interaction with the components of the endocytotic mechanism - clath-rin and the AP-2 adaptor protein complex [6, 7].
Newly formed clathrin-coated vesicles containing the receptor detach from the cytoplasmic membrane by means of the protein called dynamin tightening the neck of the forming vesicles [8]. The internalized recep-tor-ligand complex detached as part of the vesicles further undergoes intracellular transport. The first stage of this pathway is the formation of early endosomes. It is believed that canonical early endosomes contain a small GTPase Rab5 and the early endosome antigen 1 (EEA1). In the majority of cases, the internalized recep-
tor remains accessible to the molecules of the intracellular signaling cascade and, therefore, can continue to participate in the signal transduction as if it was localized on the surface of the membrane [9]. Then, depending on the type of the receptor, one of two scenarios is possible. The receptor either dissociates from the bound ligand and is recycled back to the cell surface (re-sensitization) or is transferred to late endosomes and is subjected to degradation within lysosomes (Fig. 1). The fate of specific receptors depends on whether the activation was of a short-term nature or was a prolonged type of activation/reactivation [10]. Thus, for instance, the P2-adrenergic receptor following short-term activation by an agonist recycles back primarily to the cytoplasmic membrane; however, upon prolonged activation it can be transferred to the lysosome for degradation, thereby
reducing the number of receptors on the surface of the membrane (down-regulation) [10].
Recycling to the cytoplasmic membrane can occur via a rapid pathway through Rab4-containing endo-somes, and via a slow pathway through Rab11-con-taining recycling endosomes [11]. It is believed that late endosomes contain receptors intended for degradation. Transition from early to late endosomes is accompanied by the replacement of protein Rab5 with protein Rab7 - the so-called “Rab conversion” [12].
MECHANISM OF CLATHRIN-MEDIATED INTERNALIZATION
Clathrin-coated vesicles have a three-layered structure: the outer layer is formed by clathrin (clathrin lattice), the internal layer is a lipid membrane with protein inclusions, while adaptor proteins are found in between. The adaptor protein complexes interact directly with the lipid bilayer, and clathrin in turn binds to the adaptors [13].
It is presumed that endocytosis begins with the formation of pits on the inner surface of the cytoplasmic membrane containing clathrin, the AP-2 adaptor protein complex, and accessory proteins [14]. The subunits of the adaptor complex trigger the formation of the clathrin lattice at specific sites of the cytoplasmic membrane and mediate the interaction between clath-rin and the cargo protein [15]. AP-2 plays an important role in selecting the target for endocytosis by binding either directly to a transmembrane cargo protein containing the necessary sequences or via helper proteins, such as P-arrestins [16]. Binding of AP-2 to the membrane is a two-stage process. First the a-subunit of AP-2 binds weakly to phosphatidylinositol-4,5-bi-sphosphate (PtdIns(4,5)P2). AP-2 affinity for the corresponding endocytic motifs increases upon phosphorylation of a threonine residue in the ^2-subunit of AP-2 [17] by adaptor-associated kinase, AAK1 [18, 19]. This phosphorylation enables the ^2-subunit to bind to motifs of the cargo protein undergoing endocytosis and to PtdIns(4,5)P2 in the membrane creating the foundation for the formation of a clathrin-coated vesicle. Then, the adaptor complex can bind to the other accessory proteins, such as CALM, required for the formation of a clathrin lattice. Removal of this protein from the cell leads to the formation of large asymmetric clathrin-coated pits [20]. Simultaneously with the polymerization of clathrin, the process involves a variety of other proteins required for the control of the invagination of the cytoplasmic membrane and the formation of the pit on it. It is believed that the bending of the membrane is attributed to the action of several proteins containing BAR-domains (Bin/amphiphysin/Rvs) [21], such as amphiphysin [22] and endophilin [23]. The protein epsin
is also able to stimulate the bending of the membrane [24]. Polymerizing clathrin forms the lattice (consisting of hexagons and pentagons) surrounding the emerging pits and, thus, stabilizes the membrane curvature [25].
Subsequent deformation of the membrane and polymerization of clathrin lead to the clathrin-coated vesicle remaining attached to the main part of the membrane via a narrow neck requiring GTPase dynamin for the completion of the detachment of the vesicle. Am-phiphysin already being a part of the vesicle contains binding sites for both clathrin and dynamin. It is presumed that it “attracts” dynamin to the forming vesicle and facilitates its oligomerization [26]. According to the two proposed models, after polymerization of dynamin around the neck of the vesicle, a GTP hydrolysis-dependent change in its structure results in the constriction (first model) or stretching (second model) of the neck and detachment of the vesicle from the remainder of the membrane [27].
Removal of the clathrin coat from the surface of the vesicle is necessary for further fusion of the vesicle with the target membrane and delivery of endocytosed “cargo” to the target destination. The primary participants in the process of depolymerization of the clathrin coat include the proteins Hsc70 and auxilin. Auxilin, an homologue of Hsp40, binds to clathrin and attracts Hsc70, which interacts with its J-domain. As a result of interaction with auxilin, the ATPase activity of Hsc70 increases and it binds to clathrin with increased affinity, thus distorting the conformation and contributing to the dismantling of the clathrin lattice into individual molecules [28, 29]. The layer formed by the adaptor complex is removed as a result of dephosphorylation of the AP-proteins by phosphatases, as it was shown for the ^1-subunit of the AP-1 [30]. The proteins synapto-janin and endophilin dephosphorylate membrane phospholipids, thereby reducing the affinity of the adaptors for vesicles [31].
KEY PROTEINS INVOLVED IN CLATHRIN-MEDIATED ENDOCYTOSIS
G-protein-coupled receptor kinases and P-arrestins
A large number of proteins that are capable of direct interactions with the GPCR have been described [32]. However, only two classes of proteins, other than G-proteins, that specifically interact with ligand-activated receptors are known: GPCR kinases (GRK) and P-arrestins [33].
The GRK family comprises products of seven different genes. The expression of GRK1 and -7 is limited to retinal rods and cones, respectively. GRK4 is exclusively expressed in the cerebellum, testis and kidneys. GRK2, -3, -5 and -6, in contrast, are expressed in vari-
Fig 2. Clathrin molecule (triskel-ion). Segments of the clathrin heavy chain are indicated. The terminal domain is the N-terminal domain and the C-terminal domains are localized in the center of the molecule. The position of the light chains is shown schematically. Figure adapted from [40]
Terminal domain
ous mammalian tissues. Seven kinases are divided into three subfamilies with respect to amino acid sequence homology. GRK1 and -7; GRK2 and -3 contain pleck-strin homology (PH) domain, and association of these kinases with plasma membranes is dependent on the interaction with the G^-subunit of the G-proteins and PtdIns(4,5)P2; GRK4-6 proteins are continuously associated with the membrane [34].
Arrestins comprise 4 proteins. Arrestins 1 and 4 (x-arrestin) are expressed in retinal rods and cones, respectively. Arrestins 2 and 3 (also known as P-arrestins 1 and 2) are present in all tissues [5]. GRK and arrestins control GPCR activity at three levels: (1) silencing -functional detachment of the receptor from its G-pro-tein; (2) regulation of transport - removal of the receptor from the cytoplasmic membrane (internalization), recycling back to the membrane and/or degradation; and (3) signal transduction - activation or inhibition of the intracellular signaling pathways independent of G-proteins. The N-terminal portion of arrestin 1 [35] and arrestins 2 and 3 [36, 37] contains the regions responsible for the recognition of agonist-activated phos-phorylated GPCR. According to the proposed model, the charged phosphate groups of the receptor destroy the polar core of the arrestin resulting in the release of its C-terminal part, which is responsible for binding to the proteins involved in endocytosis - clathrin and AP-2 [38].
Clathrin
The major protein of clathrin-coated vesicles isolated by Pierce [39] was named clathrin as it was characterized by an ability to form structures with an ordered lattice, or “clathrates.” The clathrin molecule resembles a triskelion (derived from Greek. Tpioxe^nC - three-legged - a symbolic mark resembling three running legs that extend from one point) and consists of three heavy and three light chains [40] (Fig. 2).
A clathrin heavy chain (HC) isolated from a rat’s brain is composed of 1,675 amino acid residues and has a molecular weight slightly exceeding 191 kDa (approximately 180 kDa as determined by denaturing polyacrylamide gel electrophoresis (SDS-PAGE)). The amino acid sequences of the clathrin heavy chain isolated from the brain of a human, rat or bovine are highly conserved (~ 99%) [41]. Clathrin heavy chains have also been isolated from the clathrin-coated vesicles of yeast [42] and plants [43].
Each clathrin heavy chain is in a complex with one of the light chains, LCa or LCb, encoded by different genes. The amino acid sequences of the light chains are highly conserved across different species (95-98%). The electrophoretic mobility of light chains consisting of 230-250 amino acid residues in the SDS-PAGE corresponds to a molecular weight of approximately 30-40 kDa. Three domains are identified in the light chain: the conserved C-terminal, the central a-helical,
and the acidic N-terminal. The homology of both chains at the amino acid sequence level reaches 60% [41]. The region consisting of 22 amino acid residues located at the N-terminus, the clathrin heavy chain binding site, the cysteine residues near the C-terminal portion, and the serine residues enriched casein kinase II phosphorylation site of the light chain LCb are highly conserved [44]. Light chains bind the proximal domains of the clathrin heavy chains [45]; primary binding is provided by the amino acid residues 1267-1522 of the heavy chain, the residues 93-160 of the light chain LC and the residues 90-157 of the LCb [46].
The regions that are necessary for the trimerization of heavy chains, binding of light chains, and formation of the clathrin lattice are located at the intersection of clathrin heavy chains [47, 48]. The domain that ensures the trimerization of heavy chains is localized between the amino acid residues 1488 and 1587.
Two sites for the binding of clathrin to adaptor proteins are located in the N-terminal domain. The first site interacts with peptides containing the “clathrin box” (L0X0[D/E], where 0 is a large hydrophobic amino acid). Examples of proteins containing such a motif include P-adaptins (the LLNLD sequence is found in P-adaptins 1 and 2, the LLDLD sequence is found in P-adaptin 3), P-arrestins 1 (LIELD) and 2 (LIEFE) and amphiphysins 1 and 2 (LLDLD) [49]. The second site binds proteins containing the W-box motif (PWXXW, where X is any amino acid); e.g., the molecules of the aforementioned amphiphysins 1 and 2 [50].
Clathrin molecules spontaneously self-assemble in weakly acidic Ca2+-containing buffers with a low ionic strength to form a heterogeneous population of closed polyhedral structures resembling a lattice [51, 52]. The vertex of each triskelion is located at the vertex of the lattice. The heavy chain legs and associated light chains extend outwardly from the vertices forming the edges of the lattice (Fig. 3).
All heavy chains form the two adjacent edges of a polyhedral lattice. The legs appear to interact via their proximal and distal domains. Each edge consists of two antiparallel proximal domains located above two antiparallel distal domains [53]. The fragments of clathrin obtained by expression in a heterologous system and consisting of a proximal domain and a region necessary for trimerization are able to self-assemble into trimers but cannot form lattices. Formation of the clathrin lattice requires distal domains that are correctly oriented by binding of the terminal domains to adaptor proteins [54]. Terminal domains in the lattice are directed inwardly towards the center and are located under the vertex, which is positioned at a distance of two vertices from the center of the triskelion. Here, the terminal domains assume the shape of hooks-projections provid-
Fig 3. Hexagonal clathrin barrel model (7.9A resolution). Only the heavy chains of clathrin are indicated. Figure adapted from [40]
ing a points of contact with the inner layer formed by adaptor proteins [55].
It is worth mentioning that clathrin is also involved in mitosis. It is presumed that it is necessary for the stabilization of the microtubules that attach to kineto-chores (called K-fibers) [56].
AP adaptor protein complexes
The second major protein of clathrin-coated vesicles is the adaptor protein complex. Its discovery was made possible by its ability to stimulate the assembly of the clathrin lattice under physiological conditions [57]. At least two adaptor complexes - AP-1 and AP-2 - have been extensively researched. These complexes have structural similarities and are composed of two different subunits of high molecular weight ~ 100 kDa (typically called adaptins), two subunits of medium size (47-50 kDa), and two low-molecular-weight subunits (17-19 kDa). The AP-2 complex comprises the following subunits: a and P2 (or P) adaptins, the ^2 subunit (50 kDa) or AP50 and the o2 subunit (17 kDa) or AP17. The AP-1 complex comprises y and P1 (or P’) adaptins, AP47 (or ^1) and AP19 (or o1) [58].
The designation that uses the same letters of the Greek alphabet reflects the structural and presumably
functional similarity of the subunits of the AP-1 and AP-2 complexes [59, 60]. a- and Y-adaptins differ most significantly (~ 30% amino acid sequence homology), while the ^- and o-subunits of the AP-1 complex exhibit high levels (~ 50%) of homology to the corresponding ^- and o-subunits of the AP-2 complex, and P1- and P2-adaptins are highly homologous (> 90%). AP-3 and AP-4 complexes that are similar in subunit composition have also been identified: 8 and P3, ^3, o3 - in the AP-3 complex; e and P4, |^4, o4 - in the AP-4 complex [61, 62].
The complex of subunits forms a structure resembling Mickey Mouse’s head (Fig. 4), where the center is formed by the ^ and 8 subunits, and the two “ears” are composed of the C-terminal domains of the two large subunits, a and P, connected to the “head” via a flexible neck [63].
While the assembly of the clathrin lattice occurs on the membrane, it has been established that clathrin itself has no affinity with lipids. It is therefore considered that clathrin is attracted to the membrane by adaptor proteins [64, 65].
AP-2 is the main protein adaptor found on the plasma membrane and is involved in the formation of clathrin-coated vesicles during endocytosis. Immunofluorescence and immunoelectron microscopy demonstrated that AP-1, -3 and -4 are localized in endosomes and the Golgi complex [66]. AP-1 mediates the transport of proteins from the Golgi complex to early or late endosomes.
AP-1 and AP-2 directly interact with the N-terminal domain of the clathrin heavy chain via the clathrin-binding site in the P-chain. In 1998, cryoelectron microscopy was utilized to elucidate the structure of the AP-2 complex with clathrin [55]. It was established that AP-2 forms a shell of continuous density in the center of the lattice. Based on the images obtained, it was also concluded that AP-2 forms contacts with the terminal domains of the clathrin lattice. Subsequently, an X-ray diffraction analysis confirmed that the P-subunits of the AP-1, -2, and -3 containing the clathrin-binding motif interact with the terminal domain of the clathrin heavy chain [49].
In addition to clathrin, AP complexes interact with integral membrane proteins. The YXX0 sequence, located in the intracellular domains of many receptors, is recognized by the ^-subunit of all AP-complexes [67]. [DE]XXXL[LI] motifs, which are also found in the cytoplasmic domain of the receptors, bind to the P-subunits of the AP-complexes, and these subunits exhibit different affinities to different [DE]XXXL[LI] motifs. For instance, AP-1 and AP-2, but not AP-3, interact with the DDQRDLI and NEQLPML sites [68]. The DERA-PLI and EEKQPLL signals interact with AP-3, but not AP-1 or AP-2 [69].
AP-1
AP-2
AP-3
AP-4
Fig 4. Schematic diagram of the AP complexes. All complexes consist of two large subunits, one medium subunit, and a small subunit. Figure adapted from [63]
Adaptor protein complexes are capable of binding to cell membrane lipids. Two lipid binding sites have been described [70]. The first site is located in the N-terminal part of the a-subunit of AP-2, and the second site is localized on the surface of the ^2 subunit [71]. Binding to the membrane is determined by the interaction of the phosphates PtdIns(4,5)P2 and side chains of the basic amino acid residues of the adaptor protein.
Auxilin
Auxilin is a multi-domain protein with a molecular weight of 100 kDa containing a clathrin-binding domain, a J-domain, and a region homologous to phos-phoinositide phosphatase PTEN (Fig. 5A) [72, 73]. The N-terminal domain binds to phosphoinositol derivatives and PtdIns(4,5)P2 [74, 75]. The auxilin central domain interacts with clathrin, the AP-2 complex [76], and dy-namin [77].
Cryoelectron microscopy at a 20A resolution was utilized to obtain images of full-sized auxilin [78] and its fragment (549-910) [79] with a clathrin lattice. Auxilin forms a shell of density within the lattice with points of contact with the clathrin terminal domains. Auxilin is capable of interaction with the terminal domain of the clathrin heavy chain via the LLGLE motif comprising the amino acid residues 496-500. It was established that
A Auxilin 1
Lipid binding
Clathrin binding
Hsc70 binding
PTEN binding J
1 60
387 547
814
910
Fig 5. Domain organization of auxilin and Hsc70. Numbers indicate the boundaries of various domains. Figure adapted from [85]
Hsc70
Nucleotide binding
Substrate binding
384 395
SBD
650
the fragment containing the J- and clathrin-binding domains of auxilin interacts with the two “ankles” of the clathrin heavy chain at their point of intersection and with the subsequent terminal domain. Binding of auxilin to the clathrin lattice causes the terminal domains to twist outwards, which is attributed to a change in the position of the “ankle.” This change in the position of terminal domains causes global changes throughout the entire lattice, increasing its diameter. It is believed that auxilin attracts Hsc70 to these areas, which are important for interaction within the lattice [55, 79].
Hsc70
Hsc70 is a constitutively expressed chaperone involved in many cellular processes, including protein folding, degradation, and translocation. Another interesting function of Hsc70 is its ability to “dismount” the clathrin lattice. Thus, addition of ATP and Hsc70 to clathrin-coated vesicles in vitro causes disassembly of the clath-rin lattice [80]. This is a stoichiometric reaction that requires 3 mol of Hsc70 and ATP for the dissociation of 1 mol of clathrin triskelions [80-82].
Similary to all Hsp70 family members, Hsc70 requires a protein containing a J-domain to “work” with a particular substrate [83]. Auxilin, which binds to clathrin and contains a J-domain, plays that function. The J-domain in the auxilin molecule is positioned in a way that the motif required for the interaction with the Hsc70 protein is exposed on the outside of the lattice. The QLMLT sequence (1638-1642) located in the C-terminal portion of the clathrin heavy chain is also required [84] (Fig. 5B). The following model of lattice disassembly is proposed: bending at the location of intersection of “ankles” caused by the interaction with auxilin enables Hsc70 to bind to its site near the C-ter-
minus of the clathrin molecule. It is assumed that one vertex of the triskelion binds one molecule of Hsc70 and for the strong interaction to be achieved hydrolysis of ATP is required. Therefore, deformation of the clath-rin lattice which had begun after binding to auxilin is enhanced [85].
Other clathrin-interacting proteins
Apart from the AP-2 adaptor complex, clathrin-coat-ed vesicles also contain other proteins. A vast array of monomeric adaptors that bind to clathrin and are able to interact with integral membrane proteins, Pt-dIns(4,5)P2 and AP-2, in order to ensure the occurrence of clathrin-mediated endocytosis of transmembrane proteins have been identified (Fig. 6). Examples of such adaptors include epsins, the CALM/AP180 protein, HIP1, and HIP1R. The N-terminal domain of these proteins that binds to PtdIns(4,5)P2 is called ENTH (epsin N-terminal homology) or ANTH (AP180 N-terminal homology domain). Another group of monomeric proteins includes Dab2, ARH, and Numb. These proteins bind to AP-2, and some of them interact with clathrin. They all contain a phosphotyrosine-binding domain (PTB) responsible for interaction with membrane lipids and for recognition of the FXNPXY motif localized in the cytoplasmic portions of LDLRs. It was demonstrated that phosphorylation of tyrosine at this motif is not a prerequisite for the binding of monomeric adaptors [71].
In addition to binding to cell membrane lipids, the adaptors recognize the signals localized in the cytoplasmic portion of the receptors. These may include posttranslational modifications (phosphorylation, ubiquitination), short peptide motifs, or both [86]. It is presumed that binding of the adaptor to the cytoplasmic membrane is stabilized upon simultaneous interac-
B
NBD
Epsin 1
ENTH
HH Ml 550 aa
CALM/AP180
ANTH
aa
Fig. 6. Monomeric clathrin-binding adaptors. Schematic representation of the overall domain structure. Figure adapted from [70]
Dab2
PTB
■ H 770
aa
Numb
PTB
H 603
aa
ARH
PTB
308 aa
Eps15
EH EH EH
■ I «12
aa
HIP 1
ANTH
I I
1003 aa
Epsin N-terminal homology domain (binds to
PtdIns(4,5)P2) □ AP2 binding segment
AP180 N-terminal homology domain (binds to PtdIns(4,5)P2) 1 NPF motif (binds to EH domain)
Phosphotyrosine binding domain (binds to PtdIns(4,5)P2) ■ JIM (ubiquitin-interacting motif)
Eps15 homology domain (binds to NPF) □ Clathrin binding region
Coiled-coil region ■ Talin homology domain
tion of the adaptor with PtdIns(4,5)P2 and the receptor [70, 87].
The role of all these adaptor proteins is poorly understood. Perhaps, the use of various proteins enables to avoid simultaneous accumulation of various GPCR in the same clathrin-coated vesicle [88].
Specific recognition of the receptor for its subsequent removal from the membrane is the role of adaptors that has been most researched. This recognition leads to disruption of the delivery of the receptor to the ligand responsible for its activation and often to the transfer of the receptor to lysosomes for degradation.
Internalization of the receptor mediated by a specific adaptor may also result in the receptor being directed to another cellular compartment with its own set of signaling molecules [89]. Another consequence of the selective removal of the receptor from the cell surface may be such a cellular development, which is associated with one of the daughter cells receiving a different set of adaptors responsible for the endocytosis of certain receptors. For instance, during the development of Drosophila sense organs, the adaptor Numb is transferred to only one of the two daughter cells. Numb is responsible for the adjustment of the development of
TPR | TPR | TPR TPR ,i TPR i TPR
TRIP8b
Fig 7. Schematic representation of the protein TRIP8b domain organization
the cell it is located in by inhibiting transduction of signals along the Notch-pathway. Inhibition is attributed to receptor endocytosis; however, it is unclear whether the protein Numb controls the endocytosis of Notch directly or via the transmembrane regulator of Notch -Sandopo [90, 91].
As mentioned above, the proteins Numb, Dab2, and ARH contain a domain that specifically recognizes the FXNPXY sequence in the cytoplasmic portion of the receptors. It was demonstrated that the proteins ARH and Dab2 are involved in the endocytosis of the LDL receptor, and the Numb protein regulates the endocy-tosis of the integral membrane proteins, including the EGF and Notch receptors [88].
The Epsin protein is involved in clathrin-mediated endocytosis in mammalian cells, where it plays an important role in the cytoplasmic membrane bending attributed to the action of the ENTH domain. The occurrence of this process is associated with the C-terminal portion of the protein binding to clathrin coat components (clathrin and AP-2 N-terminal domains, and EH-domain of the protein Eps15), which leads to the assembly of the clathrin lattice. The UIM-repeats of the epsin protein that acts as an adaptor protein facilitate recognition of the ubiquitinated “cargo”: in particular transmembrane proteins [88, 92].
The proteins AP180 and CALM ease the assembly of the clathrin-coated vesicles and regulate their size [20,
93, 94]. It is assumed that AP180 and CALM play an important role in ensuring the polarity and control of the growth of the axons and dendrites of the hippocampal neurons [95].
TRIP8b - novel clathrin-binding protein and a potential endocytosis adaptor
TRIP8b (TPR-containing Rab8b interacting protein) is one of the recently discovered potential adaptors involved in the regulation of endocytosis. Being expressed predominantly in brain tissue, TRIP8b was initially identified as a protein that interacts with the small GTP-ase Rab8b [96]. Six TPR-motifs are located in the C-terminal part of TRIP8b, forming the TPR-domain (Fig. 7). TPR-motifs represent repeats consisting of 34 amino acids. These motifs are found in many proteins
and are involved in protein-protein interactions [97]. These repeats are often arranged consecutively, resulting in a spatial structure consisting of two antiparallel a-helices connected by a short loop [98]. The N-terminal portion of TRIP8b does not contain sequences homologous to other known proteins and undergoes alternative splicing [99].
It is known that TRIP8b is 40% identical to the Pex5 protein (peroxin protein) and their C-terminal portion containing TPR-domains are 57% identical (other names for the TRIP8b include Pex5Rp, Pex5p related protein) [100]. The Pex5 protein is found in many organisms ranging from yeast to mammals; it is responsible for the recognition and import of peroxisomal proteins containing the C-terminal SKL motif (peroxisome-targeting signal type 1, PTS1) from the cytosol into peroxisomes. Despite the fact that TRIP8b recognizes the PTS1 sequence it has been established that it is not involved in peroxisomal protein import [100].
TRIP8b interacts with the Rab8b protein and also directly with a protein that forms the HCN-channel (Hyperpolarization-activated, Cyclic Nucleotide-regulated channel) [99, 101]. It was found that TRIP8b binds to the CIRL1 receptor [102], which belongs to the GPCR class, and to the transmembrane protein called Caspr [103].
HCN channels belong to the family of voltage-dependent channels [104-106]. These channels are involved in the control of the heart and brain pacemakers’ activity, ensuring resting membrane potential and synaptic transmission (see reviews [107] and [108]). Investigations into the interactions between TRIP8b and the HCN channel demonstrated that TRIP8b regulates the functions and surface expression of the channel [99,
101, 109, 110]. It is assumed that TRIP8b acts as an auxiliary adaptor for HCN and that the interaction is mediated by at least two different regions in the TRIP8b and HCN molecules [111, 112].
All of the previously identified interactions of TRIP8b with other proteins were mediated by the TPR-domains localized in the C-terminal part of TRIP8b [96, 99, 100] or a segment located in the conserved central region of the protein [109, 111, 112].
As mentioned above, the N-terminal portion of TRIP8b undergoes alternative splicing. Isoforms of the
protein generated as a result of splicing affect the HCN transport and its localization on the cytoplasmic membrane differently: some isoforms increase the surface expression of HCN1 and others decrease it [109, 110]. It was found that TRIPBb interacts with clathrin and this interaction involves the N-terminal portion of the protein TRIPBb [103, 113]. The clathrin-binding site in the TRIPBb molecule consists of two short motifs reminiscent of the “clathrin box” motif.
In order to investigate the TRIPBb functions two types of knockout mice were obtained. The phenotype of mice lacking certain TRIPBb isoforms was identical to that of wild-type mice [114]. Abnormalities in the motor learning and increased resistance during the behavioral despair test were observed in mice with a complete absence of the protein (TRIPBb-/-) [115].
The need to conduct further investigations into clathrin-mediated endocytosis is unquestionable. In-
ternalization of ligand-activated receptors and the functions of various accessory proteins are of significant interest. Interactions between clathrin and numerous adaptor proteins are currently being actively investigated. Clathrin is involved in various processes: endocytosis, intracellular traffic, and segregation of chromosomes. It is assumed that abnormalities in the functioning of clathrin can lead to the development of certain diseases. In this regard, investigations into the structure and functions of clathrin-coated vesicles, as well as the proteins involved in the formation of the latter, is of interest from the point of view of molecular biology and biomedicine. •
This work was supported by the Russian Foundation for Basic Research (Grant № 11-04-12151-ofi-m-2011, 12-04-01817-a, 12-04-32099 mol_a).
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